ptpn5 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ptpn5

Protein tyrosine phosphatase non-receptor type 5. (570 aa)

Predicted Functional Partners:

Ptprr

0.908

LOC107100975

0.908

LOC107101186

0.904

mapk1

0.904

dusp3

0.902

LOC107104997

0.902

LOC107086723

0.664

LOC107101432

0.664

LOC107087504

0.664

LOC107088576

0.664

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107086723	LOC107100975	ENSCVAP00000000499	ENSCVAP00000018883	Mitogen-activated protein kinase.	Uncharacterized protein.	0.832
LOC107086723	LOC107101186	ENSCVAP00000000499	ENSCVAP00000013006	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.933
LOC107086723	LOC107104997	ENSCVAP00000000499	ENSCVAP00000020804	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107086723	Ptprr	ENSCVAP00000000499	ENSCVAP00000016972	Mitogen-activated protein kinase.	Tyrosine-protein phosphatase domain-containing protein.	0.832
LOC107086723	dusp3	ENSCVAP00000000499	ENSCVAP00000004911	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107086723	mapk1	ENSCVAP00000000499	ENSCVAP00000015363	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.933
LOC107086723	ptpn5	ENSCVAP00000000499	ENSCVAP00000001941	Mitogen-activated protein kinase.	Protein tyrosine phosphatase non-receptor type 5.	0.664
LOC107087504	LOC107100975	ENSCVAP00000010645	ENSCVAP00000018883	Mitogen-activated protein kinase.	Uncharacterized protein.	0.832
LOC107087504	LOC107101186	ENSCVAP00000010645	ENSCVAP00000013006	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.933
LOC107087504	LOC107104997	ENSCVAP00000010645	ENSCVAP00000020804	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107087504	Ptprr	ENSCVAP00000010645	ENSCVAP00000016972	Mitogen-activated protein kinase.	Tyrosine-protein phosphatase domain-containing protein.	0.832
LOC107087504	dusp3	ENSCVAP00000010645	ENSCVAP00000004911	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107087504	mapk1	ENSCVAP00000010645	ENSCVAP00000015363	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.933
LOC107087504	ptpn5	ENSCVAP00000010645	ENSCVAP00000001941	Mitogen-activated protein kinase.	Protein tyrosine phosphatase non-receptor type 5.	0.664
LOC107088576	LOC107100975	ENSCVAP00000016108	ENSCVAP00000018883	Mitogen-activated protein kinase.	Uncharacterized protein.	0.832
LOC107088576	LOC107101186	ENSCVAP00000016108	ENSCVAP00000013006	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.934
LOC107088576	LOC107104997	ENSCVAP00000016108	ENSCVAP00000020804	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107088576	Ptprr	ENSCVAP00000016108	ENSCVAP00000016972	Mitogen-activated protein kinase.	Tyrosine-protein phosphatase domain-containing protein.	0.832
LOC107088576	dusp3	ENSCVAP00000016108	ENSCVAP00000004911	Mitogen-activated protein kinase.	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.773
LOC107088576	mapk1	ENSCVAP00000016108	ENSCVAP00000015363	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.933