STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001953C2 domain-containing protein. (110 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
     
 0.529
ENSCVAP00000031587
Uncharacterized protein.
     
 0.529
ENSCVAP00000031602
Uncharacterized protein.
     
 0.529
rabac1
PRA1 family protein.
    
   0.516
LOC107081878
Syntaxin 1A (brain); Belongs to the syntaxin family.
    
 0.492
LOC107097655
Syntaxin 1B; Belongs to the syntaxin family.
    
 0.492
stx2
Syntaxin 2b; Belongs to the syntaxin family.
    
 0.492
LOC107102333
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.492
stx3
Syntaxin 3A; Belongs to the syntaxin family.
    
 0.492
rab3c
RAB3C, member RAS oncogene family.
   
 0.469
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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