Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107092843Testis expressed 2. (1171 aa)    
Predicted Functional Partners:
ccdc115
Coiled-coil domain containing 115.
    
 0.526
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.508
LOC107101132
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.508
pdzd8
PDZ domain containing 8.
   
 
 0.492
ddrgk1
Uncharacterized protein.
    
  0.492
nkiras2
NFKB inhibitor interacting Ras-like 2.
      
 0.492
stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
  0.489
pip4p2
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).
      
 0.456
nckap5l
NCK-associated protein 5-like.
      
 0.454
vapb
MSP domain-containing protein.
    
 0.443
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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