LOC107091121 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107091121

PRELI/MSF1 domain-containing protein. (210 aa)

Predicted Functional Partners:

ENSCVAP00000023854

0.983

PRELID3B

0.766

LOC107102988

0.766

prelid3a

0.766

phb

0.573

ccdc69

0.541

stard7

0.531

ENSCVAP00000007923

0.505

ENSCVAP00000009129

0.505

tamm41

0.502

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000007923	ENSCVAP00000023854	ENSCVAP00000007923	ENSCVAP00000023854	Cardiolipin synthase 1.	TP53 regulated inhibitor of apoptosis 1.	0.462
ENSCVAP00000007923	LOC107091121	ENSCVAP00000007923	ENSCVAP00000001969	Cardiolipin synthase 1.	PRELI/MSF1 domain-containing protein.	0.505
ENSCVAP00000007923	tamm41	ENSCVAP00000007923	ENSCVAP00000010357	Cardiolipin synthase 1.	Phosphatidate cytidylyltransferase, mitochondrial; Catalyzes the formation of CDP-diacylglycerol (CDP-DAG) from phosphatidic acid (PA) in the mitochondrial inner membrane. Required for the biosynthesis of the dimeric phospholipid cardiolipin, which stabilizes supercomplexes of the mitochondrial respiratory chain in the mitochondrial inner membrane.	0.497
ENSCVAP00000009129	ENSCVAP00000023854	ENSCVAP00000009129	ENSCVAP00000023854	Uncharacterized protein.	TP53 regulated inhibitor of apoptosis 1.	0.462
ENSCVAP00000009129	LOC107091121	ENSCVAP00000009129	ENSCVAP00000001969	Uncharacterized protein.	PRELI/MSF1 domain-containing protein.	0.505
ENSCVAP00000009129	tamm41	ENSCVAP00000009129	ENSCVAP00000010357	Uncharacterized protein.	Phosphatidate cytidylyltransferase, mitochondrial; Catalyzes the formation of CDP-diacylglycerol (CDP-DAG) from phosphatidic acid (PA) in the mitochondrial inner membrane. Required for the biosynthesis of the dimeric phospholipid cardiolipin, which stabilizes supercomplexes of the mitochondrial respiratory chain in the mitochondrial inner membrane.	0.497
ENSCVAP00000023854	ENSCVAP00000007923	ENSCVAP00000023854	ENSCVAP00000007923	TP53 regulated inhibitor of apoptosis 1.	Cardiolipin synthase 1.	0.462
ENSCVAP00000023854	ENSCVAP00000009129	ENSCVAP00000023854	ENSCVAP00000009129	TP53 regulated inhibitor of apoptosis 1.	Uncharacterized protein.	0.462
ENSCVAP00000023854	LOC107091121	ENSCVAP00000023854	ENSCVAP00000001969	TP53 regulated inhibitor of apoptosis 1.	PRELI/MSF1 domain-containing protein.	0.983
ENSCVAP00000023854	LOC107102988	ENSCVAP00000023854	ENSCVAP00000007222	TP53 regulated inhibitor of apoptosis 1.	PRELI domain containing 3.	0.915
ENSCVAP00000023854	PRELID3B	ENSCVAP00000023854	ENSCVAP00000000958	TP53 regulated inhibitor of apoptosis 1.	PRELI domain containing 3B.	0.915
ENSCVAP00000023854	phb	ENSCVAP00000023854	ENSCVAP00000010266	TP53 regulated inhibitor of apoptosis 1.	Prohibitin.	0.660
ENSCVAP00000023854	prelid3a	ENSCVAP00000023854	ENSCVAP00000031374	TP53 regulated inhibitor of apoptosis 1.	PRELI domain containing 3A.	0.915
ENSCVAP00000023854	stard7	ENSCVAP00000023854	ENSCVAP00000005214	TP53 regulated inhibitor of apoptosis 1.	StAR-related lipid transfer (START) domain containing 7.	0.773
ENSCVAP00000023854	tamm41	ENSCVAP00000023854	ENSCVAP00000010357	TP53 regulated inhibitor of apoptosis 1.	Phosphatidate cytidylyltransferase, mitochondrial; Catalyzes the formation of CDP-diacylglycerol (CDP-DAG) from phosphatidic acid (PA) in the mitochondrial inner membrane. Required for the biosynthesis of the dimeric phospholipid cardiolipin, which stabilizes supercomplexes of the mitochondrial respiratory chain in the mitochondrial inner membrane.	0.535
LOC107091121	ENSCVAP00000007923	ENSCVAP00000001969	ENSCVAP00000007923	PRELI/MSF1 domain-containing protein.	Cardiolipin synthase 1.	0.505
LOC107091121	ENSCVAP00000009129	ENSCVAP00000001969	ENSCVAP00000009129	PRELI/MSF1 domain-containing protein.	Uncharacterized protein.	0.505
LOC107091121	ENSCVAP00000023854	ENSCVAP00000001969	ENSCVAP00000023854	PRELI/MSF1 domain-containing protein.	TP53 regulated inhibitor of apoptosis 1.	0.983
LOC107091121	LOC107102988	ENSCVAP00000001969	ENSCVAP00000007222	PRELI/MSF1 domain-containing protein.	PRELI domain containing 3.	0.766
LOC107091121	PRELID3B	ENSCVAP00000001969	ENSCVAP00000000958	PRELI/MSF1 domain-containing protein.	PRELI domain containing 3B.	0.766