Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
slc16a12Solute carrier family 16 member 12b. (478 aa)    
Predicted Functional Partners:
emb
Embigin.
    
 0.558
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
      
 0.510
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
    
 
 0.505
LOC107103406
Pantothenate kinase 2.
      
 0.464
LOC107089905
Pantothenate kinase 1a.
      
 0.464
sdhd
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family.
    
 
 0.416
rnf10
Ring finger protein 10.
      
 0.416
asb4
Ankyrin repeat and SOCS box containing 4.
      
 0.406
cfap161
Cilia and flagella associated protein 161.
      
 0.405
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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