Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Kcnj11Potassium inwardly-rectifying channel, subfamily J, member 11. (396 aa)    
Predicted Functional Partners:
abcc8
ATP-binding cassette, sub-family C (CFTR/MRP), member 8.
   
 0.987
ENSCVAP00000003264
ATP-binding cassette, sub-family C (CFTR/MRP), member 9.
   
 0.949
LOC107091899
Rap guanine nucleotide exchange factor (GEF) 3.
     
 0.675
rapgef4
Zgc:171558.
     
 0.602
LOC107085744
Rap guanine nucleotide exchange factor (GEF) 4.
     
 0.602
LOC107103517
Potassium inwardly-rectifying channel, subfamily J, member 11, like.
      
 0.595
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.588
rfx6
Regulatory factor X, 6.
   
  
 0.543
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.542
LOC107090031
Protein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily.
   
 
 0.542
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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