Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095277Uncharacterized protein. (1586 aa)    
Predicted Functional Partners:
cramp1
Cramped chromatin regulator homolog 1.
   
 
 0.844
ss18l2
Ss18, like 2.
    
 
 0.777
LOC107093437
Sphingomyelin phosphodiesterase 4.
   
  
 0.627
fancm
Uncharacterized protein.
    
 0.588
LOC107084057
Ash1 (absent, small, or homeotic)-like (Drosophila).
   
 
 0.581
lsm10
LSM10, U7 small nuclear RNA associated.
    
 0.564
ENSCVAP00000000444
Ras association domain family member 11.
      
 0.529
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.524
ENSCVAP00000017542
Fanconi_A_N domain-containing protein.
     
 0.508
LOC107087587
YY1 transcription factor.
   
 0.503
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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