Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095260Uncharacterized protein. (198 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.704
ENSCVAP00000018101
Uncharacterized protein.
  
     0.504
ebna1bp2
EBNA1 binding protein 2.
   
   0.462
LOC107084384
Uncharacterized protein.
   
 0.459
tent4b
Terminal nucleotidyltransferase 4B.
   
 0.459
tent4a
Terminal nucleotidyltransferase 4A.
   
 0.459
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 0.450
brix1
Brix domain containing 2.
   
   0.435
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.420
LOC107096170
Four and a half LIM domains 5.
      
 0.410
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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