Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fitm1Fat storage inducing transmembrane protein 1. (319 aa)    
Predicted Functional Partners:
LOC107097987
Zgc:92429.
   
  
 0.583
cilp2
Cartilage intermediate layer protein 2.
      
 0.544
cilp
Cartilage intermediate layer protein, nucleotide pyrophosphohydrolase.
      
 0.544
LOC107093914
Solute carrier family 25 member 25b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.540
hpgd
15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.536
LOC107090678
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.536
LOC107102418
PLA2c domain-containing protein.
      
 0.471
lrrc2
Uncharacterized protein.
   
  
 0.462
lrrc39
Leucine rich repeat containing 39.
   
  
 0.462
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.424
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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