STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutcCutC copper transporter homolog (E. coli). (268 aa)    
Predicted Functional Partners:
nadsyn1
Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.
    
   0.885
atox1
Antioxidant 1 copper chaperone.
      
 0.712
egfl7
EGF-like-domain, multiple 7.
      
 0.650
LOC107084255
Uncharacterized protein.
      
 0.645
PCDH20
Protocadherin 20.
      
 0.614
ENSCVAP00000000885
Rad51 domain-containing protein.
      
 0.576
slc30a7
Solute carrier family 30 member 7.
  
  
 0.554
commd1
Copper metabolism (Murr1) domain containing 1.
      
 0.549
LOC107082908
Cytochrome c oxidase assembly homolog 11 (yeast).
      
 0.545
gnl1
Guanine nucleotide binding protein-like 1.
      
 0.544
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.