STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000002048Uncharacterized protein. (719 aa)    
Predicted Functional Partners:
ccdc177
Uncharacterized protein.
      
 0.672
LOC107097214
Proline rich 12a.
      
 0.644
ush1c
Usher syndrome 1C.
   
 0.580
neo1
Neogenin 1b.
    
 0.532
LOC107102270
Whirlin b.
    
 0.525
whrn
Whirlin a.
    
 0.525
LOC107083163
Usher syndrome 1Ga (autosomal recessive).
   
 0.506
LOC107090238
Usher syndrome 1Gb (autosomal recessive).
   
 0.506
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.506
ENSCVAP00000026779
BHLH domain-containing protein.
   
  
 0.416
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.