STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aampAngio-associated, migratory cell protein. (416 aa)    
Predicted Functional Partners:
rpl10
Ribosomal protein L10.
    
 
 0.995
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.907
LOC107088811
Uncharacterized protein.
   
  
 0.835
tbxa2r
Thromboxane A2 receptor.
    
 0.767
nmd3
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
  
 0.752
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.741
hspbp1
HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1.
    
 
 0.732
LOC107103557
Mitochondrial ribosomal protein L16.
    
 
 0.732
LOC107090715
39S ribosomal protein L16, mitochondrial-like.
    
 
 0.732
sil1
SIL1 nucleotide exchange factor.
    
 
 0.732
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.