LOC107081956 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107081956

Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (389 aa)

Predicted Functional Partners:

LOC107093189

0.977

ADCYAP1

0.765

LOC107099963

0.765

thoc1

0.666

vip

0.664

crh

0.524

RAMP3

0.522

ucn

0.518

shox

0.512

LOC107095035

0.467

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCYAP1	LOC107081956	ENSCVAP00000002070	ENSCVAP00000002067	Adenylate cyclase activating polypeptide 1a.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.765
ADCYAP1	crh	ENSCVAP00000002070	ENSCVAP00000015131	Adenylate cyclase activating polypeptide 1a.	Corticotropin releasing hormone b.	0.409
LOC107081956	ADCYAP1	ENSCVAP00000002067	ENSCVAP00000002070	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Adenylate cyclase activating polypeptide 1a.	0.765
LOC107081956	LOC107093189	ENSCVAP00000002067	ENSCVAP00000000918	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Growth hormone releasing hormone.	0.977
LOC107081956	LOC107095035	ENSCVAP00000002067	ENSCVAP00000007667	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone-like hormone b.	0.467
LOC107081956	LOC107099963	ENSCVAP00000002067	ENSCVAP00000027406	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Adenylate cyclase activating polypeptide 1b.	0.765
LOC107081956	RAMP3	ENSCVAP00000002067	ENSCVAP00000002167	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Receptor activity modifying protein 3.	0.522
LOC107081956	crh	ENSCVAP00000002067	ENSCVAP00000015131	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Corticotropin releasing hormone b.	0.524
LOC107081956	shox	ENSCVAP00000002067	ENSCVAP00000005729	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Short stature homeobox.	0.512
LOC107081956	thoc1	ENSCVAP00000002067	ENSCVAP00000031387	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	THO complex 1.	0.666
LOC107081956	ucn	ENSCVAP00000002067	ENSCVAP00000029541	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Urotensin 1.	0.518
LOC107081956	vip	ENSCVAP00000002067	ENSCVAP00000009056	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Vasoactive intestinal peptide.	0.664
LOC107093189	LOC107081956	ENSCVAP00000000918	ENSCVAP00000002067	Growth hormone releasing hormone.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.977
LOC107093189	crh	ENSCVAP00000000918	ENSCVAP00000015131	Growth hormone releasing hormone.	Corticotropin releasing hormone b.	0.427
LOC107095035	LOC107081956	ENSCVAP00000007667	ENSCVAP00000002067	Parathyroid hormone-like hormone b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.467
LOC107099963	LOC107081956	ENSCVAP00000027406	ENSCVAP00000002067	Adenylate cyclase activating polypeptide 1b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.765
LOC107099963	crh	ENSCVAP00000027406	ENSCVAP00000015131	Adenylate cyclase activating polypeptide 1b.	Corticotropin releasing hormone b.	0.409
RAMP3	LOC107081956	ENSCVAP00000002167	ENSCVAP00000002067	Receptor activity modifying protein 3.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.522
crh	ADCYAP1	ENSCVAP00000015131	ENSCVAP00000002070	Corticotropin releasing hormone b.	Adenylate cyclase activating polypeptide 1a.	0.409
crh	LOC107081956	ENSCVAP00000015131	ENSCVAP00000002067	Corticotropin releasing hormone b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.524