STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc34Zgc:153293. (358 aa)    
Predicted Functional Partners:
LOC107088729
Nuclear envelope integral membrane protein 1.
      
 0.610
ENSCVAP00000018366
Glutathione S-transferase, C-terminal domain containing.
    
 
 0.606
ccdc77
Coiled-coil domain containing 77.
   
  
 0.598
LOC107089010
Coiled-coil domain containing 106b.
      
 0.579
cep85
Centrosomal protein 85.
     
 0.577
arhgap11a
Rho GTPase activating protein 11A.
   
 0.537
znf367
Zinc finger protein 367.
   
 
 0.519
LOC107097969
RIB43A domain with coiled-coils 2.
   
 0.501
ribc1
RIB43A domain with coiled-coils 1.
   
 0.501
mettl9
Methyltransferase like 9.
      
 0.481
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.