STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095728Uncharacterized protein; Belongs to the cytochrome P450 family. (348 aa)    
Predicted Functional Partners:
lss
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 0.685
sqle
Squalene epoxidase a.
  
 0.672
LOC107090983
Phosphoethanolamine methyltransferase.
   
 0.626
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.580
ENSCVAP00000016222
Uncharacterized protein.
  
 0.525
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.503
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.478
palb2
PALB2_WD40 domain-containing protein.
  
 0.478
rps26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
    
   0.477
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.477
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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