Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pank4Pantothenate kinase. (774 aa)    
Predicted Functional Partners:
coasy
CoA synthase.
      
 0.945
LOC107087463
Coiled-coil domain containing 30.
     
 0.897
ppcs
Phosphopantothenoylcysteine synthetase.
     
 0.897
LOC107090533
Glutamate receptor, metabotropic 3.
    
 
 0.750
GPR139
G protein-coupled receptor 139.
      
 0.737
apbb2
Amyloid beta (A4) precursor protein-binding, family B, member 2b.
    
 
 0.737
LOC107088240
Uncharacterized protein.
    
 
 0.732
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
      
 0.718
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
      
 0.717
CRHR2
Corticotropin releasing hormone receptor 2; Belongs to the G-protein coupled receptor 2 family.
      
 0.688
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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