STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107087175Fam20C domain-containing protein. (425 aa)    
Predicted Functional Partners:
LOC107086263
Fam20C domain-containing protein.
  
 
0.780
LOC107092808
FAM20C golgi associated secretory pathway kinase a.
  
 
0.779
ENSCVAP00000004515
Family with sequence similarity 20 member C, like.
  
 
0.778
fgf23
Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.
     
 0.506
ENSCVAP00000026293
Uncharacterized protein.
   
  0.492
mbtps1
Membrane-bound transcription factor peptidase, site 1.
     
 0.480
LOC107084678
SPARC-like 2.
     
 0.477
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
     
 0.477
LOC107105123
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.465
qsox2
Sulfhydryl oxidase.
     
 0.465
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.