STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1031 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.898
wdr48
WD repeat domain 48b.
   
 0.871
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.867
ENSCVAP00000021667
Ubiquitin-like domain-containing protein.
    
 0.850
LOC107100301
WD repeat domain 20b.
   
 0.751
wdr20
WD repeat domain 20a.
   
 0.751
LOC107092488
DM1 locus, WD repeat containing.
   
 0.751
ENSCVAP00000003489
Uncharacterized protein.
    
 0.724
ENSCVAP00000029934
Ubiquitin-like domain-containing protein.
    
 0.724
fancd2
FA complementation group D2.
    
 0.721
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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