STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
washc4WASH complex subunit 4. (1124 aa)    
Predicted Functional Partners:
washc5
WASH complex subunit 5.
  
 0.951
washc3
WASH complex subunit 3.
    
 0.898
LOC107090566
WAS protein family homolog 1.
    
 0.896
ENSCVAP00000011422
CAP-ZIP_m domain-containing protein.
   
 
 0.757
Fam21c
Uncharacterized protein.
   
 
 0.757
LOC107095337
Zgc:153184.
   
 
 0.600
LOC107082894
CAP-ZIP_m domain-containing protein.
   
 
 0.600
LOC107084255
Uncharacterized protein.
      
 0.581
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.497
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.462
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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