STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107087157Neuronal pentraxin receptor a. (536 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.737
rnf2
Ring finger protein 2.
    
 0.737
LOC107089155
Polyhomeotic homolog 2b (Drosophila).
    
 0.620
rcn2
Reticulocalbin 2.
    
 
 0.615
ENSCVAP00000006163
Bmi1 polycomb ring finger oncogene 1a.
    
 0.592
pcgf2
Polycomb group ring finger 2.
    
 0.592
pcgf5
Polycomb group ring finger 5a.
    
 0.550
eed
Embryonic ectoderm development.
    
 0.532
PCGF3
Polycomb group ring finger 3.
    
 0.525
pcgf6
Polycomb group ring finger 6.
    
 0.506
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.