STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lystLysosomal trafficking regulator. (2550 aa)    
Predicted Functional Partners:
hps5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
   
  
 0.673
hps3
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1.
      
 0.671
ENSCVAP00000012080
Vesicle (multivesicular body) trafficking 1.
    
 
 0.635
ap3d1
Adaptor related protein complex 3 subunit delta 1.
    
 0.629
Fig4
Uncharacterized protein.
   
  
 0.592
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
  
 0.592
rabggta
Rab geranylgeranyltransferase subunit alpha.
      
 0.587
sqstm1
Sequestosome 1.
   
 
 0.587
mpv17
Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.581
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.572
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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