STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103297Uncharacterized protein. (1535 aa)    
Predicted Functional Partners:
ENSCVAP00000021667
Ubiquitin-like domain-containing protein.
    
 0.740
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.740
rps27a
Ribosomal protein S27a.
    
 0.733
LOC107096288
Proteasome 26S subunit, non-ATPase 4b.
    
 0.612
LOC107101111
Proteasome 26S subunit, non-ATPase 4a.
    
 0.612
smad7
Mothers against decapentaplegic homolog.
    
 0.599
smad6
Mothers against decapentaplegic homolog.
    
 0.599
LOC107097790
Mothers against decapentaplegic homolog.
    
 0.599
LOC107084459
Mothers against decapentaplegic homolog.
   
 0.573
LOC107088450
Mothers against decapentaplegic homolog.
   
 0.573
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.