STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000002247TPR_REGION domain-containing protein. (380 aa)    
Predicted Functional Partners:
gtf3c5
General transcription factor IIIC, polypeptide 5.
   
 0.999
polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
    
 0.990
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
   0.970
bdp1
SANT domain-containing protein.
   
 0.964
LOC107087639
Uncharacterized protein.
    
 0.959
clp1
Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]
    
 
 0.959
ENSCVAP00000028190
Symplekin.
   
   0.952
gtf3c4
General transcription factor IIIC, polypeptide 4.
   
 0.939
ENSCVAP00000008093
Uncharacterized protein.
    
 0.906
ENSCVAP00000012610
B-block_TFIIIC domain-containing protein.
    
 0.906
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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