garem2 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

garem2

GRB2 associated, regulator of MAPK1-like. (734 aa)

Predicted Functional Partners:

rab3ip

0.745

ENSCVAP00000026967

0.745

ENSCVAP00000001993

0.727

gdi1

0.727

LOC107103103

0.727

exoc1

0.703

exoc2

0.702

exoc5

0.700

exoc6

0.654

LOC107094665

0.654

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001993	ENSCVAP00000026967	ENSCVAP00000001993	ENSCVAP00000026967	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB3A interacting protein (rabin3)-like 1.	0.595
ENSCVAP00000001993	garem2	ENSCVAP00000001993	ENSCVAP00000002341	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	GRB2 associated, regulator of MAPK1-like.	0.727
ENSCVAP00000001993	rab3ip	ENSCVAP00000001993	ENSCVAP00000004731	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB3A interacting protein (rabin3).	0.595
ENSCVAP00000026967	ENSCVAP00000001993	ENSCVAP00000026967	ENSCVAP00000001993	RAB3A interacting protein (rabin3)-like 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.595
ENSCVAP00000026967	LOC107094665	ENSCVAP00000026967	ENSCVAP00000019096	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.829
ENSCVAP00000026967	LOC107103103	ENSCVAP00000026967	ENSCVAP00000024629	RAB3A interacting protein (rabin3)-like 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.595
ENSCVAP00000026967	exoc1	ENSCVAP00000026967	ENSCVAP00000009199	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 1.	0.805
ENSCVAP00000026967	exoc2	ENSCVAP00000026967	ENSCVAP00000003624	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.798
ENSCVAP00000026967	exoc5	ENSCVAP00000026967	ENSCVAP00000032519	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 5.	0.843
ENSCVAP00000026967	exoc6	ENSCVAP00000026967	ENSCVAP00000006965	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.829
ENSCVAP00000026967	garem2	ENSCVAP00000026967	ENSCVAP00000002341	RAB3A interacting protein (rabin3)-like 1.	GRB2 associated, regulator of MAPK1-like.	0.745
ENSCVAP00000026967	gdi1	ENSCVAP00000026967	ENSCVAP00000021998	RAB3A interacting protein (rabin3)-like 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.595
LOC107094665	ENSCVAP00000026967	ENSCVAP00000019096	ENSCVAP00000026967	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	RAB3A interacting protein (rabin3)-like 1.	0.829
LOC107094665	exoc1	ENSCVAP00000019096	ENSCVAP00000009199	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 1.	0.983
LOC107094665	exoc2	ENSCVAP00000019096	ENSCVAP00000003624	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.983
LOC107094665	exoc5	ENSCVAP00000019096	ENSCVAP00000032519	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 5.	0.983
LOC107094665	garem2	ENSCVAP00000019096	ENSCVAP00000002341	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	GRB2 associated, regulator of MAPK1-like.	0.654
LOC107094665	rab3ip	ENSCVAP00000019096	ENSCVAP00000004731	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	RAB3A interacting protein (rabin3).	0.829
LOC107103103	ENSCVAP00000026967	ENSCVAP00000024629	ENSCVAP00000026967	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB3A interacting protein (rabin3)-like 1.	0.595
LOC107103103	garem2	ENSCVAP00000024629	ENSCVAP00000002341	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	GRB2 associated, regulator of MAPK1-like.	0.727