STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn10Ataxin 10. (485 aa)    
Predicted Functional Partners:
cdpf1
C6_DPF domain-containing protein.
      
 0.552
LOC107081919
Zgc:153119.
      
 0.541
iqcb1
Uncharacterized protein.
    
 
 0.519
atxn2
Ataxin 2.
   
  
 0.512
LOC107104576
TGc domain-containing protein.
   
  
 0.484
bean1
Uncharacterized protein.
      
 0.483
C8orf37
Chromosome 8 open reading frame 37.
      
 0.482
TNPO2
Transportin 2.
   
  
 0.407
tnpo1
Transportin 1.
   
  
 0.407
tnpo2
Transportin 2 (importin 3, karyopherin beta 2b).
   
  
 0.407
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.