STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbl1Retinoblastoma-like 1 (p107). (925 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
   
 0.995
e2f4
E2F transcription factor 4.
   
 0.992
ENSCVAP00000012118
E2F_TDP domain-containing protein.
   
 0.991
ccne2
Cyclin E2; Belongs to the cyclin family.
   
 0.983
E2F3
E2F transcription factor 3.
   
 0.982
ENSCVAP00000010842
E2F_TDP domain-containing protein.
   
 0.982
e2f2
Si:ch211-160f23.5.
   
 0.982
ccnd1
Cyclin D1; Belongs to the cyclin family.
    
 0.978
LOC107084303
Cyclin D2, a; Belongs to the cyclin family.
    
 0.978
LOC107085698
Cyclin D2, b; Belongs to the cyclin family.
    
 0.978
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.