STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acot11Acyl-CoA thioesterase 11b. (576 aa)    
Predicted Functional Partners:
rttn
Rotatin.
      
 0.672
grk4
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.672
etfa
Electron transfer flavoprotein subunit alpha.
    
 0.622
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.604
cryl1
Crystallin, lambda 1.
  
 
 0.603
LOC107102016
C19h1orf109 homolog (H. sapiens).
   
    0.600
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.600
LOC107096308
Thioesterase superfamily member 4.
     
 0.570
etfb
Electron transfer flavoprotein subunit beta.
    
  0.562
ftsj1
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
    0.557
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.