STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psmf1Uncharacterized protein. (208 aa)    
Predicted Functional Partners:
psma8
Proteasome subunit alpha type.
   
 0.840
psma1
Proteasome endopeptidase complex.
   
 0.839
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
    
 0.829
LOC107080947
Uncharacterized protein.
    
 0.827
psmb7
Proteasome subunit beta.
    
 0.827
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.818
psmb1
Proteasome subunit beta.
    
 0.814
psma2
Proteasome subunit alpha type.
    
 0.803
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
   
 0.798
psma4
Proteasome subunit alpha type.
    
 0.784
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.