STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095707MOB family member 4, phocein. (226 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
   
 
 0.958
gsc
Goosecoid.
    
   0.951
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.926
slmap
Sarcolemma associated protein a.
    
 
 0.922
tcp1
T-complex 1.
   
 
 0.895
traf3ip3
Uncharacterized protein.
    
 
 0.893
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
   
 
 0.893
LOC107094837
CTTNBP2 N-terminal like b.
    
 
 0.880
LOC107103357
CTTNBP2 N-terminal like a.
    
 
 0.880
cct2
Chaperonin containing TCP1, subunit 2 (beta).
   
 
 0.876
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.