STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000002540Uncharacterized protein. (431 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.802
ENSCVAP00000003917
CCHC-type domain-containing protein.
 
 
  0.718
ENSCVAP00000000498
Reverse transcriptase domain-containing protein.
 
     0.629
Lin52
Lin-52 DREAM MuvB core complex component.
    
 0.494
rbbp4
Retinoblastoma binding protein 4.
    
 0.483
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.482
ENSCVAP00000030762
Uncharacterized protein.
  
     0.481
ENSCVAP00000030954
Reverse transcriptase domain-containing protein.
 
     0.467
ENSCVAP00000011845
RT_RNaseH_2 domain-containing protein.
  
     0.456
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.452
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.