STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc127Coiled-coil domain containing 127a. (273 aa)    
Predicted Functional Partners:
supt7l
SPT7 like, STAGA complex gamma subunit.
   
  
 0.683
LOC107083185
Si:dkey-21c1.1.
      
 0.657
mto1
Mitochondrial tRNA translation optimization 1.
      
 0.606
tada2b
Transcriptional adapter.
      
 0.584
asb7
Ankyrin repeat and SOCS box containing 7.
      
 0.571
cnot10
CCR4-NOT transcription complex, subunit 10.
      
 0.559
Cfap61
Si:zfos-223e1.2.
      
 0.485
LOC107088469
Liver-enriched gene 1, tandem duplicate 1.
      
 0.410
gcat
Glycine C-acetyltransferase.
      
 0.408
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.