STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094042Ankyrin repeat domain 33ba. (527 aa)    
Predicted Functional Partners:
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
  
  
 0.551
aprt
Adenine phosphoribosyltransferase.
  
 
 0.513
LOC107090513
Zgc:174895.
  
 
 0.513
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.509
LOC107084483
Uncharacterized protein.
   
 
 0.508
LOC107095553
Regulating synaptic membrane exocytosis protein 2 isoform X1.
   
 
 0.505
gart
Phosphoribosylglycinamide formyltransferase.
  
 
 0.498
dock4
Dedicator of cytokinesis 4b; Belongs to the DOCK family.
  
 
  0.474
LOC107104443
Intersectin 2b.
    
  0.467
ENSCVAP00000031587
Uncharacterized protein.
    
  0.467
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.