STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081877Calpain 12; Belongs to the peptidase C2 family. (721 aa)    
Predicted Functional Partners:
LOC107092282
Uncharacterized protein.
   
0.619
CAPNS1
Calpain small subunit 1.
   
0.619
ENSCVAP00000015409
Uncharacterized protein.
   
 0.550
ENSCVAP00000029978
Uncharacterized protein.
   
 0.550
LOC107104443
Intersectin 2b.
   
 
  0.523
ENSCVAP00000031587
Uncharacterized protein.
   
 
  0.523
ENSCVAP00000031602
Uncharacterized protein.
   
 
  0.523
ENSCVAP00000032118
Guanylate kinase-like domain-containing protein.
   
 
 0.498
pef1
Penta-EF-hand domain containing 1.
   
 0.428
pdcd6
Programmed cell death 6.
   
 0.428
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.