STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf23PHD finger protein 23b. (318 aa)    
Predicted Functional Partners:
mcrs1
Microspherule protein 1.
   
 0.819
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.804
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.758
tex30
Testis expressed 30.
    
 0.758
SHC3
SHC adaptor protein 3.
      
 0.661
cutc
CutC copper transporter homolog (E. coli).
      
 0.643
nup98
Nucleoporin 98.
    
 
 0.613
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.606
rbbp5
Retinoblastoma binding protein 5.
    
 0.559
abcc3
ATP-binding cassette, sub-family C (CFTR/MRP), member 3.
    
 
 0.555
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.