Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf23PHD finger protein 23b. (318 aa)    
Predicted Functional Partners:
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 
 0.941
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.809
LOC107105126
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
    
   0.777
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
 0.764
LOC107089821
Sap30-like.
    
 
 0.752
sap130
Sin3A-associated protein a.
    
   0.734
nup98
Nucleoporin 98.
    
 
 0.726
sin3a
SIN3 transcription regulator family member Aa.
    
 
 0.723
LOC107095362
SIN3 transcription regulator family member Ab.
    
 
 0.723
sin3b
SIN3 transcription regulator family member B.
    
 
 0.723
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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