STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107104894Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family. (479 aa)    
Predicted Functional Partners:
cplx4
Complexin 4a.
   
    0.570
asph
Un-named hu7910.
   
 
 0.547
LOC107097915
Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.
   
 0.513
LOC107102417
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.513
slc6a5
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.506
LOC107089083
Coiled-coil domain containing 85A, like.
      
 0.506
LOC107089243
ZP domain-containing protein.
   
 0.488
LOC107086759
Ankyrin repeat domain 33Aa.
   
  0.456
LOC107101618
Guanylate kinase 1a.
   
  0.414
LOC107100458
Guanylate kinase-like.
   
  0.414
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.