STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc1Arrestin domain containing 1b. (436 aa)    
Predicted Functional Partners:
txn
Thioredoxin; Belongs to the thioredoxin family.
    
 0.724
mrps18b
Mitochondrial ribosomal protein S18B.
      
 0.523
tsg101
Tumor susceptibility 101a.
    
 
 0.507
ENSCVAP00000024543
Zgc:123278.
    
 
 0.507
ENSCVAP00000015893
NDK domain-containing protein.
    
 0.486
wwp2
E3 ubiquitin-protein ligase.
    
 
 0.463
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.463
ENSCVAP00000023974
C-type lectin domain-containing protein.
    
 0.463
LOC107084905
E3 ubiquitin-protein ligase.
    
 
 0.463
xpo7
Exportin 7.
      
 0.450
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.