STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc30a1Solute carrier family 30 member 1a. (470 aa)    
Predicted Functional Partners:
LOC107089129
Solute carrier family 39 member 6.
  
 0.702
SLC39A12
Solute carrier family 39 member 12.
  
 0.701
slc39a13
Solute carrier family 39 member 13.
   
 0.698
slc39a14
Solute carrier family 39 member 14.
  
 0.681
LOC107096198
ZIP4_domain domain-containing protein.
  
 0.681
slc30a6
Solute carrier family 30 member 6.
    
 
 0.672
kcns3
Potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b; Belongs to the potassium channel family.
      
 0.664
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.660
LOC107096797
Solute carrier family 39 member 8.
  
 0.564
SLC39A11
Solute carrier family 39 member 11.
   
 0.547
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.