Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090544Si:ch1073-390k14.1. (811 aa)    
Predicted Functional Partners:
LOC107087869
Neuronal PAS domain protein 2.
   
 0.859
timeless
Timeless circadian clock.
    
 0.848
LOC107098020
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.826
per1
Period circadian clock 1b.
   
 0.806
fbxl15
F-box and leucine-rich repeat protein 15.
   
 0.776
LOC107104192
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.763
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.763
LOC107093492
Uncharacterized protein.
   
 0.762
CLOCK
Clock circadian regulator a.
   
 0.762
LOC107083329
Period circadian clock 3.
   
 0.750
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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