STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000003017Uncharacterized protein. (394 aa)    
Predicted Functional Partners:
LOC107103699
Transforming growth factor beta; Belongs to the TGF-beta family.
    
  0.619
runx3
Runt-related transcription factor.
     
 0.589
runx2
Runt-related transcription factor.
     
 0.585
LOC107098178
Runt-related transcription factor.
     
 0.585
LOC107099472
Runt domain-containing protein.
     
 0.560
med12
Mediator complex subunit 12.
      
 0.422
atxn3
Ataxin 3.
      
 0.412
cux2
Homeobox protein cut-like.
   
  
 0.412
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.