STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsx1Visual system homeobox 1 homolog, chx10-like. (366 aa)    
Predicted Functional Partners:
LOC107103267
Glutamine synthetase.
      
 0.667
LOC107083392
Glutamine synthetase.
      
 0.667
LOC107091548
Glutamine synthetase.
      
 0.667
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.649
LOC107099263
Carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family.
      
 0.643
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.537
lnx2
Ligand of numb-protein X 2a.
      
 0.489
ISL2
ISL LIM homeobox 2b.
   
  
 0.429
LOC107101483
Thioredoxin-like_fold domain-containing protein.
   
  
 0.426
LOC107101484
Nucleoredoxin like 1.
   
  
 0.426
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.