STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lama4Laminin, alpha 4. (1711 aa)    
Predicted Functional Partners:
ENSCVAP00000004763
Laminin N-terminal domain-containing protein.
   
 0.750
LOC107096811
Laminin, gamma 3.
   
0.750
lamc2
Laminin, gamma 2.
   
0.750
lamc1
Laminin, gamma 1.
   
0.750
fndc3a
Fibronectin type III domain containing 3A.
    
 0.683
ENSCVAP00000009772
Laminin N-terminal domain-containing protein.
   
 0.627
rab3ip
RAB3A interacting protein (rabin3).
     
 0.590
LOC107097287
Lysyl oxidase-like 2a.
    
 0.584
ENSCVAP00000012955
Laminin, beta 1b.
   
0.560
lamb1
Laminin, beta 1a.
   
0.560
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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