STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090546Calumenin b. (315 aa)    
Predicted Functional Partners:
tnpo3
Transportin 3.
      
 0.643
LOC107097023
Peptidylprolyl isomerase.
   
 
 0.528
ENSCVAP00000008987
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
   
 
 0.497
palld
Palladin, cytoskeletal associated protein.
    
 
 0.491
LOC107093334
Uncharacterized protein; Belongs to the cytochrome P450 family.
      
 0.489
ltbp2
Uncharacterized protein.
   
  
 0.489
atoh8
BHLH domain-containing protein.
      
 0.485
TGFB1I1
Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways.
      
 0.485
LOC107080670
Calreticulin.
   
 
 0.456
LOC107101296
Calreticulin.
   
 
 0.456
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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