STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd8Major facilitator superfamily domain containing 8. (507 aa)    
Predicted Functional Partners:
LOC107086866
MFS domain-containing protein.
     
 
0.900
LOC107082598
Si:ch211-38m6.6.
     
 
0.900
mpl
MPL proto-oncogene, thrombopoietin receptor.
    
 0.682
Cln3
Battenin.
    
 
 0.667
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.657
ENSCVAP00000016195
CLN5 intracellular trafficking protein.
      
 0.647
LOC107097482
CLN6 transmembrane ER protein a.
      
 0.646
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.645
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.606
NAA15
N(alpha)-acetyltransferase 15, NatA auxiliary subunit.
      
 0.587
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.