STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000003134ANK_REP_REGION domain-containing protein. (215 aa)    
Predicted Functional Partners:
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.831
rab21
RAB21, member RAS oncogene family.
   
 0.776
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.767
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.765
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.765
LOC107102182
Si:ch73-234b20.5.
    
 0.725
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.563
Als2
Uncharacterized protein.
    
 0.548
LOC107083525
Uncharacterized protein.
    
 0.548
RAB31
RAB31, member RAS oncogene family.
    
 0.536
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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