STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grik5Glutamate receptor, ionotropic, kainate 5. (1071 aa)    
Predicted Functional Partners:
GRIK3
Glutamate ionotropic receptor kainate type subunit 3.
  
 
0.611
LOC107087906
Glutamate receptor, ionotropic, kainate 1a.
  
 
0.610
LOC107095563
Glutamate receptor, ionotropic, kainate 1b.
  
 
0.609
LOC107081635
Uncharacterized protein.
  
 
0.609
LOC107103869
ANF_receptor domain-containing protein.
    
0.600
ENSCVAP00000012990
PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
    
0.600
nol9
Nucleolar protein 9.
      
 0.483
LOC107086656
Hairy-related 12.
      
 0.479
LOC107085142
Ring finger protein 207a.
      
 0.479
LOC107097831
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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