STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmed6Transmembrane p24 trafficking protein 6. (244 aa)    
Predicted Functional Partners:
cep76
Centrosomal protein 76.
      
 0.662
ostm1
Osteoclastogenesis associated transmembrane protein 1.
   
  
 0.655
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
      
 0.647
trabd
TraB domain containing.
      
 0.643
nip7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
  
 0.634
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.610
wdyhv1
WDYHV motif containing 1.
      
 0.602
tmed10
Transmembrane p24 trafficking protein 10.
   
 
 0.596
nudt22
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
      
 0.592
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
      
 0.592
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.