STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox11Transcription factor SOX. (361 aa)    
Predicted Functional Partners:
tcf7
Transcription factor 7.
    
0.544
lef1
Lymphoid enhancer-binding factor 1.
    
0.532
LOC107088696
POU domain, class 5, transcription factor 3.
    
 0.511
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.511
LOC107101293
Uncharacterized protein.
    
 0.470
LOC107090777
Junction plakoglobin a.
    
 0.470
ENSCVAP00000017040
HMG box domain-containing protein.
    
0.446
tcf7l2
Transcription factor 7 like 2.
    
0.446
LOC107082304
Transcription factor 7 like 1b.
    
 0.446
myc
Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.
      
 0.405
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.