STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107083914Urotensin 2, alpha. (106 aa)    
Predicted Functional Partners:
LOC107094011
Uncharacterized protein.
     
 0.716
LOC107091502-2
Musculoskeletal, embryonic nuclear protein 1b.
     
 0.716
LOC107102657
Uncharacterized protein.
     
 0.679
LOC107091807
Homeobox C12a.
      
 0.662
trh
Pro-thyrotropin-releasing hormone; Functions as a regulator of the biosynthesis of TSH in the anterior pituitary gland and as a neurotransmitter/ neuromodulator in the central and peripheral nervous systems.
     
 0.542
LOC107098270
Endothelin 2.
     
 0.541
nts
Neurotensin.
   
 
 0.541
LOC107100671
Uncharacterized protein.
     
 0.488
LOC107102930
Uncharacterized protein.
     
 0.488
ppard
Peroxisome proliferator-activated receptor delta b.
      
 0.485
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.