STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081878Syntaxin 1A (brain); Belongs to the syntaxin family. (287 aa)    
Predicted Functional Partners:
vamp4
Vesicle-associated membrane protein 4.
    
 0.971
LOC107093748
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.942
LOC107086112
V-SNARE coiled-coil homology domain-containing protein.
   
 0.915
Vamp1
Zgc:92912.
   
 0.915
LOC107082578
Vesicle-associated membrane protein 2.
   
 0.915
Vamp3
V-SNARE coiled-coil homology domain-containing protein.
   
 0.900
syt1
Synaptotagmin Ia.
   
 0.834
ENSCVAP00000000394
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.775
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.775
LOC107102522
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.770
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.