STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081901Uncharacterized protein; Belongs to the peptidase C14A family. (386 aa)    
Predicted Functional Partners:
LOC107099476
Interleukin-1.
   
 0.974
LOC107099154
Interleukin-1.
   
 0.939
LOC107086824
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.933
LOC107082055
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
0.932
LOC107103272
Uncharacterized protein.
   
 0.931
LOC107089266
Uncharacterized protein.
   
 0.907
LOC107081895
Uncharacterized protein; Belongs to the peptidase C14A family.
  
  
 
0.903
ENSCVAP00000024868
CARD domain-containing protein.
   
 0.781
apaf1
Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.
    
 0.715
IRF1
Interferon regulatory factor.
   
  
 0.651
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.